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Development of LLM-Enhanced Bioinformatics Workflow for Chemical Transcriptomics Analysis

Design, implementation and validation of an end-to-end, LLM-augmented bioinformatics workflow that, given a chemical substance, automatically discovers, downloads and reanalyses transcriptomics datasets from selected public repositories. The system will harmonise key metadata, generate standardised transcriptomic signa…

Source ID: TED-90de128d-cbe7-4c89-b80b-071a75deddb8

Estimated value

€500,000

As published by the source; may be updated by the buyer.

Scope overview

Design, implementation and validation of an end-to-end, LLM-augmented bioinformatics workflow that, given a chemical substance, automatically discovers, downloads and reanalyses transcriptomics datasets from selected public repositories.

The system will harmonise key metadata, generate standardised transcriptomic signatures, cluster chemicals based on inferred mode of action, and compare the resulting groups with existing EFSA Cumulative Assessment Groups (CAGs) to support regulatory risk assessment. All code developed will be open source.

Statusopen
CategoryOther
CountryItaly
Publish dateFeb 24, 2026
Submission deadlineMar 19, 2026
Estimated value€500,000
Notice typetender_notice
Sourceeu-ted-search
BuyerEuropean Food Safety Authority
Buyer websitehttps://ted.europa.eu/
City

Buyer & contacts

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Emailefsaprocurement@efsa.europa.eu
Phone+39 0521 036 111
OrganizationEuropean Food Safety Authority

Tags & Signals

bioinformatics workflowtranscriptomics analysischemical clusteringregulatory risk assessmentLLM-augmented systemopen source softwaremetadata harmonizationmode of action inference
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